DROP PROCEDURE IF EXISTS convertToInnodb;
DELIMITER //
CREATE PROCEDURE convertToInnodb()
BEGIN
mainloop: LOOP
  SELECT TABLE_NAME INTO @convertTable FROM information_schema.TABLES
  WHERE `TABLE_SCHEMA` LIKE DATABASE()
  AND `ENGINE` LIKE 'MyISAM' ORDER BY TABLE_NAME LIMIT 1;
  IF @convertTable IS NULL THEN
    LEAVE mainloop;
  END IF;
  SET @sqltext := CONCAT('ALTER TABLE `', DATABASE(), '`.`', @convertTable, '` ENGINE = INNODB');
  PREPARE convertTables FROM @sqltext;
  EXECUTE convertTables;
  DEALLOCATE PREPARE convertTables;
  SET @convertTable = NULL;
END LOOP mainloop;

END//
DELIMITER ;

CALL convertToInnodb();
DROP PROCEDURE IF EXISTS convertToInnodb;

<?php

// Convert all MyISAM tables to INNODB tables in all non-special databases.
// Note: With MySQL less than 5.6, tables with a fulltext search index cannot be converted to INNODB and will be skipped.

if($argc < 4)
    exit("Usage: {$argv[0]} <host> <username> <password>\n");
$host = $argv[1];
$username = $argv[2];
$password = $argv[3];

// Connect to the database.
if(!mysql_connect($host, $username, $password))
    exit("Error opening database. " . mysql_error() . "\n");

// Get all databases except special ones that shouldn't be converted.
$databases = mysql_query("SHOW databases WHERE `Database` NOT IN ('mysql', 'information_schema', 'performance_schema')");
if($databases === false)
    exit("Error showing databases. " . mysql_error() . "\n");

while($db = mysql_fetch_array($databases))
{
    // Select the database.
    if(!mysql_select_db($db[0]))
        exit("Error selecting database: {$db[0]}. " . mysql_error() . "\n");
    printf("Database: %s\n", $db[0]);

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    // Get all MyISAM tables in the database.
    $tables = mysql_query("SHOW table status WHERE Engine = 'MyISAM'");
    if($tables === false)
        exit("Error showing tables. " . mysql_error() . "\n");

    while($tbl = mysql_fetch_array($tables))
    {
        // Convert the table to INNODB.
        printf("--- Converting %s\n", $tbl[0]);
        if(mysql_query("ALTER TABLE `{$tbl[0]}` ENGINE = INNODB") === false)
            printf("--- --- Error altering table: {$tbl[0]}. " . mysql_error() . "\n");
    }
}

mysql_close();

?>

SET @DATABASE_NAME = 'name_of_your_db';

SELECT  CONCAT('ALTER TABLE `', table_name, '` ENGINE=InnoDB;') AS sql_statements
FROM    information_schema.tables AS tb
WHERE   table_schema = @DATABASE_NAME
AND     `ENGINE` = 'MyISAM'
AND     `TABLE_TYPE` = 'BASE TABLE'
ORDER BY table_name DESC;